species:   Rhsol
pid:       PID0590
parent:    Rhi-milR-153
paralog:   
locus:     KB317701.1:339759-339837
matures:   ['UGUGUUGUUUUGAUUUCCUUGCA', 'CAAUGAUCUUCGAGAAGGCUACU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317701.1:339759-339837

3 out of bounds
60 alignments
60 proper strand
59 stranded perfect matches

        **************************        **************************           
CUCACCUUGGUGUGUUGUUUUGAUUUCCUUGCAGUGCCGGUCAUGCAAUGAUCUUCGAGAAGGCUACUGCUCCGUGAGC
(((((..(((((.(((.((((((..((.(((((..........))))).))...)))))).))))))))....))))).
----------UGUGUUGUUUUGAUUUCCUUGCA---------------------------------------------- l=23 a=0 c
---------------------------------------------CAAUGAUCUUCGAGAAGGCUACU----------- l=23 a=0 c*
----------UGUGUUGUUUUGAUUUCCUUGCAG--------------------------------------------- l=24 a=49 ma
--------------------------------------------GCAAUGAUCUUCGAGAAGGCUACU----------- l=24 a=0 ma*

----------UGUGUUGUUUUGAUUUCCUUG------------------------------------------------ l=21 a=2 
----------UGUGUUGUUUUGAUUUCCUUGC----------------------------------------------- l=22 a=1 
----------UGUGUUGUUUUGAUUUCCUUGu----------------------------------------------- l=22 a=1 
----------UGUGUUGUUUUGAUUUCCUUGCAG--------------------------------------------- l=24 a=49 (ma)
-----------GUGUUGUUUUGAUUUCCUUGCAG--------------------------------------------- l=23 a=1 
------------UGUUGUUUUGAUUUCCUUG------------------------------------------------ l=19 a=1 
------------UGUUGUUUUGAUUUCCUUGC----------------------------------------------- l=20 a=4 
------------UGUUGUUUUGAUUUCCUUGCAGU-------------------------------------------- l=23 a=1 

mb-01011
ax-1001111
ku-01
ss-111111101110
fn-111
